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en:hpc [2022/04/14 13:51] – [Software] grikieteen:hpc [2022/04/15 08:36] – [Registration] grikiete
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 ====== Description of the Equipment ====== ====== Description of the Equipment ======
  
-Distributed Computing Network (DCN) is a specially designed network of computers capable of running applications that can exchange data efficiently.+High Performance Computing (HPC) is a specially designed network of computers capable of running applications that can exchange data efficiently.
  
-VU MIF PST consists of a supercomputer from the clusters (the first number is the actual and available amount):+VU MIF HPC consists of a supercomputer from the clusters (the first number is the actual and available amount):
  
 ^Title ^Nodes ^CPU ^GPU ^RAM        ^HDD    ^Network ^Notes| ^Title ^Nodes ^CPU ^GPU ^RAM        ^HDD    ^Network ^Notes|
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 ====== Software ====== ====== Software ======
  
-**main** and **gpu** are installed [[https://docs.qlustar.com/Qlustar/11.0/HPCstack/hpc-user-manual.html|Qlustar 11]] operating system (OS) with Linux core. It is created Ubuntu 18.04 LTS based. **power** is installed Ubuntu 18.04 LTS.+In **main** and **gpu** partitions there are installed [[https://docs.qlustar.com/Qlustar/11.0/HPCstack/hpc-user-manual.html|Qlustar 11]] OS. It is based on Ubuntu 18.04 LTS. In **power** partition there is installed Ubuntu 18.04 LTS.
  
-You can check the list of OS package with the command ''dpkg -l'' (in log in node **hpc** or in **power** nodes).+You can check the list of OS package with the command ''dpkg -l'' (in login node **hpc** or in **power** nodes).
  
-With the command [[https://sylabs.io/guides/3.2/user-guide/index.html|singularity]] it is possible to make use of ready-made copies of container files in directories ''/apps/local/hpc'', ''/apps/local/nvidia'', ''/apps/local/intel'', ''/apps/local/lang'' or to download from singularity and docker online directories. You can also create your own singularity containers using the MIF cloud service.+With the command [[https://sylabs.io/guides/3.2/user-guide/index.html|singularity]] it is possible to make use of ready-made copies of container files in directories ''/apps/local/hpc'', ''/apps/local/nvidia'', ''/apps/local/intel'', ''/apps/local/lang'' or to download from singularity and docker online repositories. You can also create your own singularity containers using the MIF cloud service.
  
-With singularity you can prepare your container, for example:+You can prepare your container with singularity, for example:
 <code shell> <code shell>
 $ singularity build --sandbox /tmp/python docker://python:3.8 $ singularity build --sandbox /tmp/python docker://python:3.8
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 There are ready-made scripts to run your **hadoop** tasks using the [[https://github.com/LLNL/magpie|Magpie]] set in the directory ''/apps/local/bigdata''. There are ready-made scripts to run your **hadoop** tasks using the [[https://github.com/LLNL/magpie|Magpie]] set in the directory ''/apps/local/bigdata''.
  
-With [[https://hpc.mif.vu.lt/hub/|JupyterHub]] galite interneto naršyklės pagalba vykdyti skaičiavimus su python komandų eilute ir pasinaudoti [[https://jupyter.org|JupyterLab]] aplinkaJeigu savo namų kataloge instaliuosite savo JupyterLab aplinkątai reikia instaliuoti papildomai ''batchspawner'' paketą tada jums startuos jūsų aplinkąpvz:+With [[https://hpc.mif.vu.lt/hub/|JupyterHub]] you can run calculations with the python command line in a web browser and use the [[https://jupyter.org|JupyterLab]] environmentIf you install your own JupyterLab environment in your home directoryyou need to install the additional ''batchspawner'' package this will start your environmentfor example:
  
 <code shell> <code shell>
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 </code> </code>
  
-Taip pat jūs galite pasinaudoti savo pasidarytu konteineriu per JupyterHub. Tame konteineryje reikia instaliuoti ''batchswapner'' ir ''jupyterlab'' paketus bei sukurti script'ą ''~/.local/bin/batchspawner-singleuser'' su vykdymo teisėmis (''chmod +x ~/.local/bin/batchspawner-singleuser'')+Alternatively, you can use a container that you made via JupyterHub. In that container, you need to install the ''batchswapner'' and ''jupyterlab'' packages, and to create a script ''~/.local/bin/batchspawner-singleuser'' with execution permissions (''chmod +x ~/.local/bin/batchspawner-singleuser'').
 <code shell> <code shell>
 #!/bin/sh #!/bin/sh
 exec singularity exec --nv myjupyterlab.sif batchspawner-singleuser "$@" exec singularity exec --nv myjupyterlab.sif batchspawner-singleuser "$@"
 </code> </code>
 +
 +====== Registration ======
 +
 +
 +
 +Fill in the [[https://mif.vu.lt/lt3/en/about/structure/it-research-center#ordering|registration form]] to order IT Research center services. Once the request has been approved, a VU MIF computer network user ID will be assigned. If you are a VU employee or student and you have provided your VU email address during the registration, then you must enter your original password using [[https://id.vu.lt|VU EID]] (available via the [[https://mif.vu.lt/passwd2|forgotten password]] change procedure). Otherwise, you have to come to the VU MIF at 47 Didlaukio Street, Room 302/304 during office hours (for the exact time you can call 8 5219 5005 or 8 5219 5006).
 +
 +With the given (selected) username and the password entered by the user, the user has the right to connect to the server **uosis.mif.vu.lt**, to the VU MIF classrooms and to some of the VU MIF workstations computers.
 +
 +Adresu [[https://hpc.mif.vu.lt|Waldur]] yra savitarnos portalas, kur su savo universiteto (per **eduGAIN** arba **LITNET**) prisijungimu galima pačiam susikurti **HPC** prisijungimą. Daugiau info apie tai [[waldur|čia]].
 +
en/hpc.txt · Last modified: 2024/02/21 12:50 by rolnas

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